Science & Art – Bioinformatics and Plant Industry

Posts tagged “Image Science

StellaTEDxCanberra

Sharing the stories about the making of StellrScope, CSIRO and William Farrer – TEDxCanberra

Brilliant event – excellent team brought together by Stephen Collins. Thanks TEDx – Wonderful experience.

Uncharted tedxcanberra_2014

Eleanor Gates-Stuart presenting at TEDXCanberra. Photograph by Adam Thomas

Eleanor Gates-Stuart presenting at TEDXCanberra. Photograph by Adam Thomas

Gavin_Blake-Scribing-Eleanor TEDx_uncharted


Stellr’ Print Collection Available

Thank you to all your requests to buy StellrScope Artworks.

The Collection is now on-line to buy direct from Studio  E L E A N O R G A T E S T U A R T  Australia


StellrScope @ CSIRO Discovery Centre

New information panels designed by Eleanor gates-Stuart for the CSIRO Discovery Centre - StellrLume Domes

New information panels designed by Eleanor Gates-Stuart for the CSIRO Discovery Centre – StellrLume Domes

The displayed images contain a ‘StellrScope’ watermark. This does not appear on the original artwork at the CSIRO Discovery Centre.


Hot Seeds

Hot Seeds Artworks via ISSUU

Part of the Science Art Commission (Centenary of Canberra) and CSIRO Residency

Click on the image below to view the publication


StellrScope Publication

StellrScope Catalogue By Eleanor Gates-Stuart - Pages Preview

StellrScope Catalogue By Eleanor Gates-Stuart – Pages Preview

Preview the StellrScope Catalogue here:

Click on the picture below

StellrScope Exhibition Catalogue by Eleanor Gates-Stuart © 2013
Published by CSIRO
Food Futures Flagship & Computational Informatics
ISBN: 978-1-4863-0088-4
ISBN: 978-1-4863-0089-1
http://www.stellrscope.com
http://www.eleanorgatestuart.com

All Rights Reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronical or mechanical, including photocopy, recording or any other information storage and retrieval system, without prior permission in writing from the author.


Art and Science Cross-Pollinate

Art and Science Cross-Pollinate by Arwen Cross, CSIEO Blog

Art and Science Cross-Pollinate by Arwen Cross, CSIRO Blog

News @ CSIRO…. Meet the people who collaborated with Eleanor by Arwen. See Blog post http://csironewsblog.com/2013/08/16/art-and-science-cross-pollinate/


StellrScope Opening Night at Questacon

Opening Night of StellrScope at Questacon

Images: Courtesy of Canberra 100


The Centenary of Canberra – Science Art Commission Artwork

StellrLumé Domes by Eleanor Gates-Stuart. The Centenary of Canberra - Science Art Commission

StellrLumé Domes by Eleanor Gates-Stuart. The Centenary of Canberra – Science Art Commission

Video of the StellrLumé Domes at Questacon, StellrScope Exhibition.

The StellrLumé Domes installation, StellrScope, uses Spatial Augmented Reality (SAR) techniques to bring computer graphics into the human-scale physical environment. In order to facilitate interaction between the graphics and visitors, overhead depth cameras are used that sense red, green and blue as well as distance for every pixel. Custom software then extracts the human form, such as hands, over the top of the projection surface. Elements of the digital content are selected based on where ‘virtual shadows’ land. The audience must become active participants in order to experience the entire narrative.

 

The StellrLumé Domes are part of the ‘StellrScope’ Centenary of Canberra Science Art Commission and celebrate the story of wheat innovation over 100 years. The focus of these research was undertaken at CSIRO who were the Science Art Commission host, resident at the Future Food Flagship and Computational Informatics.

Credits
StellrLumé Team
Eleanor Gates-Stuart – Artist & Producer
Matt Adcock – Software Engineer
David Feng – Software Engineer
David Lovell – Transformational Bioinformatics Leader
Sherry Mayo – Research Scientist
Chuong Nguyen – Quantative Imaging
Pufferfish UK
StellrScope Music Composition by Marlene Radice

Excerpts, ‘A Nation is Built’ 1938 (Frank Hurley, Australia) NFSA title ID 7586. Courtesy of the National Film & Sound Archive of Australia

William Farrer Archives, Courtesy of the National Library of Australia and the William Farrer Trust

© Eleanor Gates-Stuart


Robyn Archer AO and Eleanor Gates-Stuart

Centenary of Canberra Robyn Archer and Eleanor Gates-Stuart

Centenary of Canberra, Creative Director Robyn Archer  AO and StellrScope Artist, Eleanor Gates-Stuart

Robyn Archer, Creative Director of the Centenary of Canberra, has first viewing of the StellrLume Domes (StellrScope Science Art Commission) with artist, Eleanor Gates-Stuart at Questacon.

The interactive domes respond to hands held over the dome to reveal a secondary visual narrative of the wheat story. The image  on this StellrLume Dome shows 3D visualisation and Micro CT scanning of bread revealing the air hole structure in bread and documenatary footage of CSIRO wheat fields.

Other content is drawn from archives from the National Library of Australia, National Film & Sound Archive, the Farrer Trust, CSIRO and artworks.

Photographs from the StellrScope Launch are on the Centenary 100 Website: http://www.canberra100.com.au/news-and-media/image-galleries/

Dome Credits: Matt Adcock, David Feng, Sherry Mayo, Steve Jobling, Pufferfish

Image: courtesy of ACT Government


StellrLume Domes

StellrLume Hemispherical Domes are the Centenary of Canberra Science Art Commission works as part of the StellrScope Exhibition at Questacon

More Information:  http://vimeo.com/eleanorgatestuart/stellrscopestellrlumedomes

Artist, Eleanor Gates-Stuart with StellrLume Dome at Questacon

Artist, Eleanor Gates-Stuart with StellrLume Dome at Questacon

Links:

ABC Canberra

StellrScope: Swirling Art and Science by Louise Maher (666 Filed & Online Reporter

http://www.abc.net.au/local/stories/2013/08/06/3819290.htm?site=canberra

Canberra Times

‘Wheat Breeder a Conduit for Enlighten Times’ by Sally Pryor, Arts Editor

http://www.canberratimes.com.au/act-news/wheat-breeder-a-conduit-for-enlighten-times-20130809-2rnvg.html


Sound of StellrScope

Composer, Marlene Radice chatting with StellrScope Artist, Eleanor Gates-Stuart at Questacon

Composer, Marlene Radice chatting with ‘StellrScope’ Artist, Eleanor Gates-Stuart at Questacon

StellrScope Artist, Eleanor Gates-Stuart is delighted to work with Local Composer and Musician, Marlen Radice, to bring Marlene’s stunning composition to the exhibition at Questacon for the Sound of ‘StellrScope’. This wonderful collaboration is made possible by CSIRO (Computational Informatics CCI), in particular, Dr David Lovell who inspired Marlene with suggestions for sound content and structure. StellrScope video files were happily provided to Marlene for background material, here is what Marlen has to say about her composition:

About the Piece:

In creating a piece of music which would serve as a backdrop to the StellrScope exhibition, I sought write and produce music which was as true as possible to the concepts which underpin the artworks.

I began the piece taking heed of the notion of the visceral experience of wheat within its natural environment by experimenting with organic sounds. This presented a chronology of the means by which wheat is processed and harvested, from the field to the mill, to factory.

These natural sounds were then edited and overlaid upon one another to produce a cacophonic sound-scape which sought to emulate the dual concepts of wheat development, in its cyclic and expansive means of proliferation throughout a century.

The piece uses a palindromic structure based around a cyclic use of musical cells. These cells are made up of 1-3 bar phrases which are built upon and repeated throughout the piece. The pitches used in these cells are based around the wheat nucleotides of Cytosine, Adenine and Guanine, with the first letter of each of these nucleotides, A, C and G, used in rhythms based around the wheat genome sequence.

I sought to use a combination of alleatoric musical ideas as well as more intuitive ones in order to further highlight the amorphous binaries of traditional and electronic music, used in tandem with the binary relationship concurrent with contemporary society’s relationship with plants and food production.

Time, change and cyclic rotation were key concepts I sought to develop within this piece of music. A century of change, growth, and renewal, a fundamental return, the return of familiar sounds in repetition, a cycle of sound mirroring a cycle inherent within nature.

Short sound clip preview


StellrScope Exhibition Banners

StellrScope Exhibition Banners: 'Oasis', 'Weevil', & 'WheatEar' by Eleanor Gates-Stuart

StellrScope Exhibition Banners: ‘Oasis’, ‘Weevil’, & ‘WheatEar’ by Eleanor Gates-Stuart

New StellrScope Banner design – three designs: ‘Oasis’‘Weevil’, & ‘WheatEar’

Which is your favourite?

StellrScope @ Questacon

Celebrating a Century of Wheat Innovation in Australia from the days of William Farrer to CSIRO Research today

5 August – 1 September, 2013

Open daily between 9.00 am and 5.00 pm

Venue:  Gallery 5, Questacon – The National Science and Technology Centre

King Edward Terrace Canberra, ACT 2604 Australia

Admission to StellrScope at Questacon is free (conditions apply,  see www.questacon.edu.au for information

 

 

 

 


Sneak Peek – Exhibition Catalogue: Cover+Inside

StellrScope Cover by Eleanor Gates-Stuart

StellrScope Cover & Inside Page by Eleanor Gates-Stuart

Sneak Peek of the StellrScope Exhibition cover and inside page. Cover is a 4 page fold out revealing the inside image behing the cover fold when opened.  Cover Image, ‘Oasis’ by Eleanor Gates-Stuart. Inside Photograph, ‘Spikes’ by Dr Megan Hemming, CSIRO.

Exhibition @ Questacon August

StellrScope

Eleanor Gates-Stuart © 2013

Exhibition Catalogue

Design and Layout by Eleanor Gates-Stuart © 2013

Published by CSIRO

Food Futures Flagship & Computational Informatics

Printed in Australia

ISBN: 978-1-4863-0088-4

ISBN: 978-1-4863-0089-1

 

 


Beautiful Mutant

Image: 'Beautiful Mutant' by Eleanor Gates-Stuart

Image: ‘Beautiful Mutant’ by Eleanor Gates-Stuart

‘Beautiful Mutant’ is the first of the virtual crop series being developed as an artwork for StellrScope. These 3D plants as based on ancestral genes and the experimental cross-breeding of wheat.

 

Image contains a StellrScope Watermark. High Resolution image is available – contact


PlantSeedMan

Sketch for 'PlantSeedMan' by Eleanor Gates_Stuart

Sketch for ‘PlantSeedMan’ by Eleanor Gates-Stuart

PlantSeedMan

Sketch and Unfinished / Rough Cut Sequence for ‘PlantSeedMan’ Installation
Video collage based on future food and wheat as part of the StellrScope Science Art Project.

Video composition using 3D kinect body scanning by Chuong Nguyen, Installation Prototype with Matt Adcock and Dulitha Ranatunga, Video and artwork by Eleanor Gates-Stuart

Raw sound files from wheat footage filmed in location @ CSIRO – https://vimeo.com/64972299


Sound of Wheat

SoundofWheat

Image: Visualising the Sound of Wheat by Eleanor Gates-Stuart

Researching: Images > Sound > Image > 3D

Using current media files to experiment with visualising wheat, both with sound and video files.

The above picture shows sound as a waveform visual (top section) and wheat images converted to a sound file (below section).

Next step > Convert to 3D

Still working on how to do this 🙂


Visualisation Wheat in 3D

Image: 'Wheat Section' by Eleanor Gates-Stuart

Image: ‘Wheat Section’ by Eleanor Gates-Stuart

This image, shown as a 2D image representation of a wheatear, is in fact, composed from a CT Scan and rendered through 3D software, Drishti and Maya.

The 3D images are to be used in artworks for the exhibition at Questacon – Maya version shown on eleanorgatestuart

Original CT Scan by Dr Sherry Mayo (CSIRO)


Cubist Dimension

Sketch: 'cube4' by Eleanor Gates-Stuart

Sketch: ‘cube4’ by Eleanor Gates-Stuart

Thinking beyond the square… next series of sketches for proposed installation work, in collaboration with Chuong Nguyen, Matt Adcock and Dulitha Ranatunga.


Golden Wheat

Microscope Photograph, ‘Golden Wheat’ by Mark Talbot – adapted by Eleanor Gates-Stuart

Working with Dr Mark Talbot and Dr Chuong Nguyen in the microscope laboratory on wheatear samples. The samples were provide by Dr Megan Hemming and relate to her recent research.

Zeiss EVOLS15 Scanning Electron Microscope (SEM)


Pest – Wheat Weevil

Image, “Wheat Pest’ by Eleanor Gates-Stuart

Images relate to pest in wheat grain, in particular the Wheat Weevil – Sitophilus Granarius.

Above video, Using the CT scanner at CSIRO to capture detailed images of the insect.

The short video sequence uses the individual image files and recomposed into this artistic render in 3D space.

Image, ‘Grain Weevil’ by Eleanor Gates-Stuart

Insect from the Australian National Insect Collection ANIC
CT Scan by Dr Fredrick Ford
3D Scanning by Dr Chuong Nguyen


4D Plant Visualisation

Image, ‘The Measure of Volume… Tracking Wheat’ by Eleanor Gates-Stuart

 

Recent images are focused on 3D Plant Plant Analysis research at the Australian Plant Phenomics Facility, the High Resolution Plant Phenomics Centre at CSIRO.

StellrScope is exploring this research as part of the extended wheat innovation story and extending this big data into 4D exploration of image and animated visualisation.

These images are concept sketches adapted from wheat data provided by Jianming Guo and Helen Daily and are part of the research with Xavier Sirault and Chuong Nguyen.

Image: ‘Snapshots of Wheat Plants’ by Eleanor Gates-Stuart (Data by Helen Daily & Jianming Guo)

More information: HRPPC Publications

http://www.plantphenomics.org.au/hrppc/publications

 


Stems

‘Stems’ by Eleanor Gates-Stuart

 

Busy working on a new series of images. ‘Stems‘ is a detail section from one of the recent 3D images created around the William Farrer Field Books. Currently collecting more plant samples and preparing for high-res’ scans.

 


BioWheat

BioWheat, Image by Eleanor Gates-Stuart

3D image, BioWheat, a bioinformatic variety.

Research data “Heatmap” from Dr David Lovell (CMIS, CSIRO).

David Lovell: The underlying texture is a drawn from a “heatmap” that depicts the similarity of gene expression profiles over a time course experiment

Data-Heatmap, Image by Eleanor Gates-Stuart in collaboration with David Lovell (CSIRO).


Wheat Ear

Chlorophyllx4, Image by Eleanor Gates-Stuart

 

Wheat Ear captured with Chlorophyll Fluorescence Imaging at CSIRO the Australian Plant Phenomics Facility 

 

Technical support kindly by Scott Kwasny


Supreme

Supreme, Image by Eleanor Gates-Stuart

 

‘Supreme’ – Celebrating scientific innovation and experimentalism

Image Reference: William Farrer’s Field Diary – National Library of Australia


DNA

DNA, Image by Eleanor Gates-Stuart

DNA‘ modified and related to ‘Sequence1


WheatScape

WheatScape, Image by Eleanor Gates-Stuart

 

The strange world of ‘WheatScape’……and the ‘Wild Ancestors’

Mock-up stage and concept development towards new 3D imageworks


First Crop

First Crop, Image by Eleanor Gates-Stuart

 

‘First Crop’, this is a 2D representation of a 3D virtual crop. (Work in progress)

©Eleanor Gates-Stuart

 


Dynamic ‘Workspace’


Images, ‘Under the hood’ by Eleanor Gates-Stuart – Inspired by ‘Workspace’ CSIRO

This series of images were created having experienced Workspace image analysis capability especially with plant industry… seeds and roots.

The ‘Workspace’ is a framework in which you can construct workflows, user interfaces and complete applications quickly and easily. It also has visualisation capabilities for two-dimensional (2D) plotting and for three-dimensional (3D) models. It is designed to facilitate collaboration between groups and individuals and to be easy to extend.

via Workshop: Workspace — CSIRO ICT Centre.