Science & Art – Bioinformatics and Plant Industry

StellrScope... the Centenary of Canberra Year 2013

Welcome to StellrScope... Celebrating the Centenary of Canberra 2013. Through ‘StellrScope’, artist Eleanor Gates-Stuart, is to explore and build on the story connecting the Canberra region to Australia’s major wheat crop, from the times of William Farrer through to today's science research at CSIRO. StellrScope will focus on the physical and biochemical traits of organisms in physical plant structures, simplifying complex visualisation data and images to construct a public artwork at Questacon. StellrScope: Translating information complexity into a simplistic visual rendering of meaning.
Interconnectedness
Sketch for 'PlantSeedMan' by Eleanor Gates_Stuart
SoundofWheat
Image: 'Wheat Section' by Eleanor Gates-Stuart
3D Wheat Concept by Eleanor Gates-Stuart: Enlighten 2013 Architectural projection on Questacon
WF_Diaries
Apex_StellrScope
FarrerVariety
Microscope Photograph, ‘Golden Wheat’ by Mark Talbot – adapted by Eleanor Gates-Stuart
Image, "Wheat Pest' by Eleanor Gates-Stuart
Wheat Photograph by Eleanor Gates-Stuart
Image, 'Wheatear3y' by Eleanor Gates-Stuart
Image, 'The Measure of Volume... Tracking Wheat' by Eleanor Gates-Stuart
'Stems' by Eleanor Gates-Stuart
BioWheat, Image by Eleanor Gates-Stuart
Chlorophyllx4, Image by Eleanor Gates-Stuart
Supreme, Image by Eleanor Gates-Stuart
DNA, Image by Eleanor Gates-Stuart
WheatScape, Image by Eleanor Gates-Stuart
First Crop, Image by Eleanor Gates-Stuart
Sequence1, Image by Eleanor Gates-Stuart
Visionary, Image by Eleanor Gates-Stuart
Grains, Image by Eleanor Gates-Stuart
VisSketchII, by Eleanor Gates-Stuart
Compositional Extract I, Image by Eleanor Gates-Stuart
BreadScape, Image by Eleanor Gates-Stuart
Image, 'MAGICal Cluster II' from the ‘MAGICal – Sequence of Nine’ Series, Eleanor Gates-Stuart
Image 'MAGICal9' by Eleanor Gates-Stuart
'Sequence of Nine' Image by Eleanor Gates-Stuart
MAGICal (re)Mix, Image by Eleanor Gates-Stuart
MAGICal B, Image by Eleanor Gates-Stuart
Image: ‘Wild Ancestor’ by Eleanor Gates-Stuart
Workspace2
seed
red
Wheat grain
WFbook1
StellrScope Logo
wheat

Latest

Inside Story

Interconnectedness

Interconnectedness of StellrScope

Looking for ways to visualise the interconnectedness of the StellrScope Project to include the network, links, collaboration and associations. This visual is a static image placing two maps together. An interactive version would be ideal.. suggestions, please?

PlantSeedMan

Sketch for 'PlantSeedMan' by Eleanor Gates_Stuart

Sketch for ‘PlantSeedMan’ by Eleanor Gates-Stuart

PlantSeedMan

Sketch and Unfinished / Rough Cut Sequence for ‘PlantSeedMan’ Installation
Video collage based on future food and wheat as part of the StellrScope Science Art Project.

Video composition using 3D kinect body scanning by Chuong Nguyen, Installation Prototype with Matt Adcock and Dulitha Ranatunga, Video and artwork by Eleanor Gates-Stuart

Raw sound files from wheat footage filmed in location @ CSIRO - https://vimeo.com/64972299

Sound of Wheat

SoundofWheat

Image: Visualising the Sound of Wheat by Eleanor Gates-Stuart

Researching: Images > Sound > Image > 3D

Using current media files to experiment with visualising wheat, both with sound and video files.

The above picture shows sound as a waveform visual (top section) and wheat images converted to a sound file (below section).

Next step > Convert to 3D

Still working on how to do this :)

Massive & MAGICal

Massive and MAGICal – ‘MAGICal Wheat’ by Eleanor Gates-Stuart in collaboration with Dr Sherry Mayo, CSIRO.

On-going StellrScope research on wheat structures and visualising the wheatear. Sherry produced a 3D micro-CT scan of a section of wheat and Drishti to render the data. MAGICal A is merged with the movie file – both image files are connected to 3D spatial data of wheat, its DNA and growth.

This movie file is a preview to the forthcoming, CSIRO informed science art works StellrScope at Questacon in August and at the CSIRO Discovery Centre.

 

Visualisation Wheat in 3D

Image: 'Wheat Section' by Eleanor Gates-Stuart

Image: ‘Wheat Section’ by Eleanor Gates-Stuart

This image, shown as a 2D image representation of a wheatear, is in fact, composed from a CT Scan and rendered through 3D software, Drishti and Maya.

The 3D images are to be used in artworks for the exhibition at Questacon – Maya version shown on eleanorgatestuart

Original CT Scan by Dr Sherry Mayo (CSIRO)

Cubist Dimension

Sketch: 'cube4' by Eleanor Gates-Stuart

Sketch: ‘cube4′ by Eleanor Gates-Stuart

Thinking beyond the square… next series of sketches for proposed installation work, in collaboration with Chuong Nguyen, Matt Adcock and Dulitha Ranatunga.

IMPRINT: New Technologies & Alternative Media

IMPRINT Article, 'StellrScope' by Eleanor Gates-Stuart & Clive Barstow

IMPRINT Article, ‘StellrScope’ by Eleanor Gates-Stuart & Clive Barstow

Article: StellrScope, the Centenary of Canberra’s Science Art Commission by Eleanor Gates-Stuart and Clive Barstow

IMPRINT, The Journal of the Print Council of Australia

New Technologies and Alternative Media

Autumn 2013   Volume 48   No. 1 Pages 30/31

Journal available: http://www.printcouncil.org.au/imprint/imprint-autumn-2013 or via Contact

Cover: ‘MAGICal_B’ 2012 by Eleanor Gates-Stuart

Giant Wheat

3D Wheat Concept by Eleanor Gates-Stuart: Enlighten 2013 Architectural projection on Questacon

3D Wheat Concept by Eleanor Gates-Stuart: Enlighten 2013 Architectural Projection on Questacon

Giant Wheat on Questacon, ‘Oasis’ by Eleanor Gates-Stuart as part of the Enlighten 2013 Festival in Canberra. The architectural projections were screened by Electric Canvas and 5 artists were selected to produce artwork for different buildings across the Parliamentary Triangle.

Artwork by Eleanor Gates-Stuart on Questacon as Part of Enlighten 2013

Artwork by Eleanor Gates-Stuart on Questacon as Part of Enlighten 2013

Oasis’ is part of the New Crop series as seen in previous postings, Bio Wheat and First Crop.

Photograph: Questacon with ‘Oasis’ Artwork by Eleanor Gates-Stuart

Links:

See More on StellrScope Enlighten 2013 Page

Eleanor Gates-Stuart

 

StellrScope – Behind the Scenes

Pages from StellrScope Sketches by Eleanor Gates-Stuart

Pages from StellrScope Sketches by Eleanor Gates-Stuart

New Pages .. Behind the Scenes (menu bar) provides a series of pages relating to making StellrScope, the Residency at CSIRO and a few other ‘who’s who’ and ‘what is what’ about the project.

William Farrer Diaries

WF_Diaries

‘Carbon Copy’, Image by Eleanor Gates-Stuart – Inspired by William Farrer Diaries

This is my first post of 2013 – the Centenary of Canberra Year. Having recently returned to view William Farrer Diaries at the National Library of Australia, I felt inspired to create this image dedicated to William Farrer.

Last year, I remember being in the manuscipts room at the NLA and feeling overwhelmed with all the artifacts at hand, yet very excitied and now back on track to see where this journey takes the research.

I found the carbon paper in his diary intriguing, a single piece of paper that holds so much information, a layering of sentence upon sentence .. words .. more words. It resonated with the way I produce much of my work, embedding layers and layers of information as a foundation and structure.

Unfortunately, this image does not give you the feeling of handling the book and the incredible sound of the crisp delicate paper.. something that has so much history and with context to Australia’s wheat legacy.

I hope to include more of William Farrer in my exhibition in August – the influence is already there.

Maximising Yield in a Changing Climate

Apex_StellrScope

Image, ‘Hot Seeds’ by Eleanor Gates-Stuart

 

Inspired by the research at CSIRO relating to plant genetics and molecular biology. In particular, Dr Megan Hemming in her focus on the development and yield in cereals.

Megan shared her microscope images of the main shoot wheat apex and I have combined these with photographs of grain.

Reference:

Hemming et al, Identification of High Temperature-Responsive Genes in Cereals. 2012

Farrer Variety

FarrerVariety

Image, ‘Farrer Variety’ by Eleanor Gates-Stuart

Image celebrates the legacy of wheat experimentalist William Farrer and the innovative contribution of the Food Futures Flagship / Plant Industry  of CSIRO.

This image, ‘Farrer Variety’ shows grain grown to plant through the pages of William Farrer’s notes. The wheat is a 3D model and modern rendering of a new strain of wheat… linking a 100 years of excellence in cross-breeding and wheat quality.

References:

William Farrer’s Letters – National Library of Australia

3D Seed Scans – Dr Chuong Nguyen, CSIRO

3D Modelling – Eleanor Gates-Stuart

Golden Wheat

Microscope Photograph, ‘Golden Wheat’ by Mark Talbot – adapted by Eleanor Gates-Stuart

Working with Dr Mark Talbot and Dr Chuong Nguyen in the microscope laboratory on wheatear samples. The samples were provide by Dr Megan Hemming and relate to her recent research.

Zeiss EVOLS15 Scanning Electron Microscope (SEM)

Pest – Wheat Weevil

Image, “Wheat Pest’ by Eleanor Gates-Stuart

Images relate to pest in wheat grain, in particular the Wheat Weevil – Sitophilus Granarius.

Above video, Using the CT scanner at CSIRO to capture detailed images of the insect.

The short video sequence uses the individual image files and recomposed into this artistic render in 3D space.

Image, ‘Grain Weevil’ by Eleanor Gates-Stuart

Insect from the Australian National Insect Collection ANIC
CT Scan by Dr Fredrick Ford
3D Scanning by Dr Chuong Nguyen

Wheat Scan

Wheat Photograph by Eleanor Gates-Stuart

Wheat samples for CT scanning.

Image: ‘Wheat Scan I’ by Eleanor Gates-Stuart

First CT scan test completed (low-res version). More testing to follow soon.

‘Wheat Scan I’ is a coloured version of the grey scale scan.

CT Scan kindly produced by Dr Fredrick Ford.

Images show StellrScope watermark – high-res images are availbale.

Animated CT sections:

This video relates to a CT scan of wheat and shows the sections scanned throughout the wheat.

Surreal Plant Structures

Image, ‘Wheatear3y’ by Eleanor Gates-Stuart

 

WheatEar images created as part of on-going 3D scanning process to recreate Wheat Crop models.  ’Wheatear3y’ is a reconstructed composition of plant structures to provide a sense of internal / external structure and beauty of the wheat plant.

Here are a series of three structures illustrating the surreal plant structures as developed for StellrScope Collection.

Image, ‘Wheatear4′ by Eleanor Gates-Stuart

 

Image, ‘Wheatear2′ by Eleanor Gates-Stuart

 

Image, ‘Wheartear3′ by Eleanor Gates-Stuart

 

The three ‘Wheatear’ images create a stunning large scale installation / projection piece as in the uncanny rescaling of nature

Image, ‘Wheatear3x3′ by Eleanor Gates-Stuart

 

Reference: Original wheat scan by Dr Chuong Nguyen.

 

 

 

 

4D Plant Visualisation

Image, ‘The Measure of Volume… Tracking Wheat’ by Eleanor Gates-Stuart

 

Recent images are focused on 3D Plant Plant Analysis research at the Australian Plant Phenomics Facility, the High Resolution Plant Phenomics Centre at CSIRO.

StellrScope is exploring this research as part of the extended wheat innovation story and extending this big data into 4D exploration of image and animated visualisation.

These images are concept sketches adapted from wheat data provided by Jianming Guo and Helen Daily and are part of the research with Xavier Sirault and Chuong Nguyen.

Image: ‘Snapshots of Wheat Plants’ by Eleanor Gates-Stuart (Data by Helen Daily & Jianming Guo)

More information: HRPPC Publications

http://www.plantphenomics.org.au/hrppc/publications

 

Stems

‘Stems’ by Eleanor Gates-Stuart

 

Busy working on a new series of images. ‘Stems‘ is a detail section from one of the recent 3D images created around the William Farrer Field Books. Currently collecting more plant samples and preparing for high-res’ scans.

 

BioWheat

BioWheat, Image by Eleanor Gates-Stuart

3D image, BioWheat, a bioinformatic variety.

Research data “Heatmap” from Dr David Lovell (CMIS, CSIRO).

David Lovell: The underlying texture is a drawn from a “heatmap” that depicts the similarity of gene expression profiles over a time course experiment

Data-Heatmap, Image by Eleanor Gates-Stuart in collaboration with David Lovell (CSIRO).

Wheat Ear

Chlorophyllx4, Image by Eleanor Gates-Stuart

 

Wheat Ear captured with Chlorophyll Fluorescence Imaging at CSIRO the Australian Plant Phenomics Facility 

 

Technical support kindly by Scott Kwasny

Supreme

Supreme, Image by Eleanor Gates-Stuart

 

‘Supreme’ – Celebrating scientific innovation and experimentalism

Image Reference: William Farrer’s Field Diary – National Library of Australia

DNA

DNA, Image by Eleanor Gates-Stuart

DNA‘ modified and related to ‘Sequence1

WheatScape

WheatScape, Image by Eleanor Gates-Stuart

 

The strange world of ‘WheatScape’……and the ‘Wild Ancestors’

Mock-up stage and concept development towards new 3D imageworks

First Crop

First Crop, Image by Eleanor Gates-Stuart

 

‘First Crop’, this is a 2D representation of a 3D virtual crop. (Work in progress)

©Eleanor Gates-Stuart

 

Image Analysis – Sequence1

Sequence1, Image by Eleanor Gates-Stuart

 

Image analysis study – ‘Sequence1′

New series of images relating to the mapping of research data and simple rules of colour matrix

 

Image References:

(Wheat chromosomes and bread wheat homoeologous G-Based chromosomes)

Appels, Morris, Gill & May, Chromosome Biology, Kluwer Academic Publishers, 1998.

 

Farrer Insights

Visionary, Image by Eleanor Gates-Stuart

‘Visionary’ dedicated to William Farrer

Image references William Farrer’s Field Notes (National Library of Australia)

Grains

Grains, Image by Eleanor Gates-Stuart

Grains … A closer view – resistant starch

Note: Embedded grain scan provided by Steve Jobling (CSIRO) 

VisSketches

ScienceScape

VisSketchI, by Eleanor Gates-Stuart

ScienceScape

VisSketchII, by Eleanor Gates-Stuart

VisSketches I + II, Concept development in progress

Reference: 3D scanning provided by Chuong Nguyen (CSIRO)

Manufactured

Manufactured, Image by Eleanor Gates-Stuart

Manufactured, Image by Eleanor Gates-Stuart

a measure of ingredients……

Originally published on Contacts Page

Wheat in Time (Rough Cut)

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Wheat in Time, Video by Eleanor Gates-Stuart

Using StellrScope wheat images to research low tech’ motion and spatial concepts.

Compositional Blends

Compositional Extract I, Image by Eleanor Gates-Stuart

Compositional Extract – Blend I & II…….. a mixture of relative data and balanced ingredients

Compositional Extract – Blend II, Image by Eleanor Gates-Stuart

BreadScape

BreadScape, Image by Eleanor Gates-Stuart

Multigrain slice of bread

Measure and elasticity of dough

9x9x9x9x9x9x9x9x9

Images completed in the MAGICal Series. Click on an image to see slideshow.

Results shown are low resolution images.

MAGICal9

MAGICal9, Image by Eleanor Gates-Stuart

An interpretation of bioinformatical spatial data and image analysis, reconstructed as ‘MAGICal9′.

The context for this series is derived from the original two images, ‘MAGICal A’ and ‘MAGICal B’ – (Mapping germinating wheat grain into flowering spikes).

*1 – 9 is the simple numerical rule for mapping

Sequence of Nine

‘Sequence of Nine’ Image by Eleanor Gates-Stuart

Multiple image representing ‘Sequence of Nine’ … the visual reconstruction and test series in MAGICal.

MAGICal (re)Mix

MAGICal (re)Mix, Image by Eleanor Gates-Stuart

MAGICal (re)Mix reflects the image of MAGICal A as an abstracted representation of its bioinformatical and scientific data … a visual remix of cross-breeding in wheat and chromosome characteristics.

MAGICal is a reference to:

CSIRO MAGIC - Multi-parent Advanced Generation Inter-Cross, allows the identification of genes controlling quantitative traits such as loaf volume, by crossing different combinations of multiple parents. The results of these crosses are plants that have a genome which is a mosaic of their multiple parents.

via A MAGIC approach to improved wheat quality.

MAGICal A + B

MAGICal A, Image by Eleanor Gates-Stuart

MAGICal B, Image by Eleanor Gates-Stuart

Cycle of Lines

Wild Ancestor

Image: ‘Wild Ancestor’ by Eleanor Gates-Stuart

The measure of parenthood

 

Image reference: Colin Cavanagh (CSIRO)

Dynamic ‘Workspace’


Images, ‘Under the hood’ by Eleanor Gates-Stuart - Inspired by ‘Workspace’ CSIRO

This series of images were created having experienced Workspace image analysis capability especially with plant industry… seeds and roots.

The ‘Workspace’ is a framework in which you can construct workflows, user interfaces and complete applications quickly and easily. It also has visualisation capabilities for two-dimensional (2D) plotting and for three-dimensional (3D) models. It is designed to facilitate collaboration between groups and individuals and to be easy to extend.

via Workshop: Workspace — CSIRO ICT Centre.

Multiple of Blue

Image,  ’Multiple of Blue’ by Eleanor Gates-Stuart

Image composite relating to the observation of wheat seed in the research lab.

Softness and Beauty

Image of wheat spike by Eleanor Gates-Stuart

Building a series of images based on the wheat spike and its enduring beauty

Dollar of Wheat

Image: 2012 Wheat Sheaf Dollar in Package Design (Front & Back), Royal Australian Mint

In celebration of the wheat industry and its contribution to the Australian economy,  the Royal Australian Mint issued the release of the 2012 wheat sheaf dollar coin design that is available as a visitor press, take home a coin from Canberra.

Statement on the One Dollar Coin Cover:

During the first half of the 20th Century, Australian coin designs reflected the nation’s burgeoning independence, which developed in parallel with successes in agriculture and primary industry. Australia’s current strong position in the global market was founded in the paddocks and plantations of generations past.

2012 Wheat Sheaf Dollar – Royal Australian Mint

Australia’s first $2 bank note featured William Farrer in celebration of his outstanding wheat experimentalism and contribution to Australia’s food future.

Beauty of Grain

Photograph by Eleanor Gates-Stuart

Gallery of images to follow documenting the StellrScope project.

William Farrer

Image by Eleanor Gates-Stuart
References: Agricultural Gazette of N. S. Wales, 1898; The Wheat Industry in Australia, Callagan & Millington, Angus and Roberston, 1956.


“It has been long suggested to me that I should write a paper giving the history and progress of the experimental work I have been engaged upon for the last ten years in improving wheats for Australia, and especially for the climate and conditions of our dry interior; but in looking into the subject, I find my notes have been kept so unsystematically and that so much has been forgotten which was of principal interest at some stage of the work, that it would be exceedingly difficult to write a paper on that subject which would be satisfactory to myself or interesting to others. I think it better, therefore, to make an effort to deal in this paper with the details of the work itself. Such a subject, if justice where done to it, would be likely to furnish suggestive information to others who might wish to take in hand work of a simimilar character, either with cereals or with some other domesticated plants”.

W. Farrer. ‘The Making and Improving of Wheats for Australian Conditions’,* March 1898. Agricultural Gazette of N. S. Wales.
*A paper read before the Australian Association for the Advancement of Science, 10 January, 1898.


Read more about William Farrer: Link: William Farrer, Australian Dictionary of Biography

StellrScope … the logo


S t e l l r S c o p e ……….. S l l e p S r t o c … p l t o S c r S l e e … e r c l t S p e l e S   Random letters of the word StellrScope form the logo.

StellrScope is a deep and intense scrutiny of the remarkable physical and biochemical traits of organisms in physical plant structures, namely wheat. Simplifying this complexity into stunning images of aesthetic analysis and graphical interface is a focus of the project.

StellrScope: Translating information complexity into a simplistic rendering of meaning.

StellrScope

Eleanor Gates-Stuart has been awarded the Centenary of Canberra, Science Art Commission, with residency as, Science Art Fellow, at the Commonwealth Scientific and Industrial Research Organisation (CSIRO) through their Transformational Biology Capability Platform (TBCP).  She will be based at the CSIRO Mathematics, Informatics and Statistics (CMIS) Research Division supported by the specialist expertise of Dr David Lovell, Bioinformatics and Analytics Leader, and Dr Matthew Morell, Theme Leader, CSIRO Food Futures Flagship. 

StellrScope will be completed in 2013 and displayed at Questacon and the CSIRO Discovery Centre in Canberra. The Centenary Science Art Commission is jointly funded by the ACT Government and the Australian Government and is one of many projects taking place to mark the Centenary of Canberra in 2013.  http://www.canberra100.com./au/

StellrScope: Translating information complexity into a simplistic rendering of meaning

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